You need to have *something* in the well to keep the pressure from causing flames to shoot out the forward closure's hole.
First choice is, of course, to get a replacement delay grain from Aerotech. You should pursue this possibility before attempting any sort of "workaround".
Failing that, as long as you don't need motor ejection, then I don't see a problem with installing the O-ring, and then inserting an appropriately-sized piece of wooden dowel rod, wrapped tightly with a few wraps of masking tape (if needed to make it fit tightly in the well). Make it long enough so that, when fully inserted against the o-ring, it extends about 1/16" out of the top of the delay well, to allow the forward seal disk to push against it when the closures are tightened.
Grease everything well to help make removal and clean-up easier after the flight.
- Rick "but, try Areotech first!" Dickinson