My preference is to leave the rear CR off (if possible) then after gluing the fin in place and doing the internal fillets, gluing it in place. I also have a habit of protecting the motor tube by inserting a pencil balloon and inflating it to prevent epoxy from dripping inside. Also, I now wrap the motor tube's back end with electrical tape to prevent the epoxy from building up and preventing the installation of the rear CR.
For those who are wondering "How do I keep the MMT centered in the body tube when gluing it into the BT?", here's an example with my Super Big Bertha scratchbuild.
1. Gather materials. Notice that the MMT here has three centering rings, for other reasons. This method works just fine for rockets with only two rings.
Sand thoroughly those areas on the MMT where the fin tabs will touch. Wipe down the sanded surface with rubbing alcohol (91% IPA) or a microfiber cloth.
(The holes drilled in the fin tabs have a purpose. Read on.)
2, If your rear CR doesn't have T-nuts or similar object that can be gripped, take two long strips of scotch tape or packing tape, and wrap each around the CR as shown below. The objective here is to make "handles" so that the CR can be removed after it's been pushed into the tube.
3. Apply glue inside the airframe to the location of the forward centering ring(s). Be careful to NOT allow glue to drip onto the location of the aft centering ring! Slide the aft centering ring onto the MMT, then insert this assembly into the body tube.
4. Now you should have a MMT that is perfectly centered in the BT, with the aft CR being removable. Allow the glue to dry/cure COMPLETELY, then grab the screws or the two pieces of tape and pull the aft CR out.
5. Apply glue to the root edge of a fin tab, and to the area on the MMT where that root edge will land. Slide the fin into its slot and against the MMT. As
@BigMacDaddy notes above, DON'T push the fin against the MMT so hard that it distorts the BT. Tape or hold the fin in the proper position until the glue dries/cures. Be sure to wipe off any glue that runs onto the MMT where the other fin tabs will land. Also wipe off any glue that may prevent the aft CR from landing on the back edges of the fin tabs.
Repeat with the other fins, one at a time. Then add MMT-fin tab fillets, using a straw or similar to apply the glue. Don't worry about looks, those fillets will never be seen by anyone but you.
6. The holes drilled in the fin tabs (see the first image) permit expanding foam to get a better grip on the tab. I mixed up a little foam and poured it into the spaces between the fin tabs. Any foam that went where it wasn't supposed to was easily removed with a Dremel. Then the aft centering ring was glued in place, and external fillets applied as usual.
Best -- Terry