I’m thinking about either going with three rail buttons or moving the bottom one 5” up from the bottom. Is there any harm in having three rail buttons? You don’t normally see it but what could be the harm as long as they all line up?
Personally, I wouldn’t do that. The downside is (as you’ve stated) getting them lined up such that you don’t cause a binding effect with the rail channel. Three buttons also adds to friction when the rocket is traversing the rail, and adds a small amount of increased aerodynamic drag.
In short, I don’t see any benefit to adding a third rail button, but I do see downsides in doing so. Why take that added risk?
I don’t see what you have as something that is broken and needing to be “fixed”, but perhaps I’m missing something. Wouldn’t be the first time!