As for charging the batteries, it would make more sense to have the batteries connected in parallel to charge, so I will probably have to set up the dip switches to have a "run mode" and a "charge mode" that changes the batteries from series to parallel. From there, all I need to add is a 3.7v voltage regulator to take the 5v from the USB plug down to what the batteries can actually take.
Thus far, I've put in $20 for the Quark, another $18 for two lighters, and while I've ordered a few $20 (approx.) lots of miscellaneous parts online, (relay, dip switches, prototyping board, etc.) I'm ultimately using only one or two parts per lot, so I figure maybe another $10 worth of other parts. Include a plastic casing and a spool of elastic cord, and I think this version still comes in under $60; a bit under half of the JLCR cost.