When you stack up the plies, you will get best results (strength, warp resistance, material workability) if you use a main or center layer and keep both top and bottom plies symmetrical. Both outer layers at +45 degrees, for example.
This means same thickness, same grain direction, and preferably same material strength (even to the point of testing several sheets and picking out two that 'match' the best, or cutting one sheet in half to use literally the same balsa in two opposite layers)
Also, try to use about the same type and amount of glue throughout your ply stack. This may not be such an important factor but it can make a small difference
Then there's all the usual stuff about cleaning the joining surfaces well, applying uniform pressure across the ply stack (old magazines and books work well), etc